Archive for the ‘Health & Medicine’ Category
Lancet investigates claims of shoddy research by Potti, Duke colleagues
Friday, July 23, 2010, 2:25 pmNow, the scandal that’s been brewing at Duke University over a researcher and his research methods has expanded to the Lancet Oncology investigating potential errors in a report the medical journal published in December 2007.
Dr. Anil Potti, a Duke cancer researcher, was suspended last week after his claim to have been a Rhodes scholar could not be confirmed. Duke also halted enrollment in three clinical trials that Potti lead. The trials used gene-based test results of drug sensitivity to predict cancer patients’ responses to chemotherapy drugs.
Potti and colleagues at Duke also did the statistical analysis for a report published in the Lancet Oncology three years ago. The report was based on results from a clinical trial involving breast cancer patients. The published report was titled, “Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy.”
The report, which had 19 co-authors, was an important step toward personalized medicine.
But the Lancet Oncology today expressed concern over errors that two of the report’s authors detected in the statistical analysis by Potti and his Duke colleagues.
Here it is: S0140673610701856
The Lancet investigation goes way beyond potentially false claims of one Duke researcher being a Rhodes scholar. Questions of research methods and errors reach beyond one possibly rogue researcher and potentially put patients’ lives at risk.
As the Stomach Churns
Tuesday, July 13, 2010, 8:34 pmWith scorching temps spoiling picnics faster than you can say “salmonella,” food safety is in the air.
A few recent reminders that we are frail, vulnerable beings in a world dominated by microbes both good and evil: Listeria-laced pre-packaged spinach was found in an Elizabeth City store; a boil-water advisory was issued in Smithfield after a test showed coliform contamination (thankfully, a false alarm—there was no E. coli); and a flight to Charlotte turned around after someone inexplicably brought spoiled meat on board and maggots fell from the overhead bin.
Last month, NC State University researcher Dr. Ben Chapman and colleagues published some alarming findings about unsafe food handling in commercial kitchens. The team placed cameras unobtrusively around eight kitchens for seven weeks and then analyzed the footage. They counted an average of one cross-contamination event per food handler per hour. A cross-contamination event puts raw or contaminated foods in contact with ready-to eat items, like cutting a piece of raw chicken and then using the same knife to cut a sandwich in half before serving.
Eww.
With practices like that, it’s no wonder that the majority of food poisoning outbreaks are attributed to meals prepared outside the home. But until this study, practices in commercial kitchens were understood mostly from self-reporting and periodic inspections, leading to a rosier view of what goes on in them than what the videos revealed.
The research team suggests ways food-preparation kitchens can improve their track record by posting food safety infosheets around the kitchen, installing more hand sanitizer dispensers, reducing time-pressure on cooks during peak hours, and making cultural changes in the way food safety training and enforcement is done. But kitchen culture is hard to change, and measures like encouraging workers to stay home when they’re ill aren’t particularly popular with managers who fear abuse of paid sick days, as Chapman observed in a recent post on the strangely addictive food safety blog Barfblog.
Bad behavior by professional chefs doesn’t let us home cooks off the hook, either. My grandmother has used nothing stronger than vinegar to clean everything from chicken leaks to the cat’s flea medicine off the kitchen counter for years, and though I love her to pieces, that’s really not okay. As the CDC preaches, we still need to clean, separate, cook, and chill our food, and keep washing our hands.
More than one in four Americans gets ill each year because of some foodborne illness, says the CDC, landing around 300,000 in the hospital and resulting in 5,000 deaths annually.
And it peaks right now—in the dog (or should that be “contaminated hot dog”) days of summer.
One reason is that bacteria are more active and multiply faster when it’s warm. Another is that people tend to let down their defenses when grilling, camping, or spending a day at the beach, washing their hands, food and utensils less frequently than they would at home in the kitchen.
Now’s the time to be even more vigilant. If you want to remind yourself of all those food safety rules that your grandmother probably didn’t teach you (if she’s like mine), foodsafety.gov has a bunch of resources, including a smart phone app for recall notices.
Of course, food and water contamination doesn’t just come from unsafe practices in home and commercial kitchens. Often, the baddies get into our food somewhere along the vast, complicated supply chain. For more on the broader issues contributing to foodborne illness, stay tuned for the Sigma Xi annual meeting in November, themed “Food Safety and Security: Science and Policy.”
I suspect whoever caters that event will take a little extra care in the kitchen.
Anne Frances Johnson is a freelance science writer and grad student at UNC. www.annefjohnson.com.
On the future of personal genomics and the law…
Friday, July 2, 2010, 1:51 pmDan Vorhaus is a lawyer with Robinson Bradshaw and Hinson in Charlotte, N.C. where a portion of his practice comprises the growing field of personal genomics law. Given the interest in personal genomics in the Triangle, I thought I’d create an expanded version of the short question-and-answer interview I did with him for an up-coming issue of the Sci-Tech section in the Charlotte Observer and the Raleigh News and Observer (be on the lookout for that next Monday in print and online), and post it here. Vorhaus also authors the Genomics Law Report, a blog about the legal side of personal genomics, and he will be giving testimony to the Food and Drug Administration in the near future as the agency attempts to sort out particulars of how it plans to regulate genomic diagnostic testing.
How did you become interested in concentrating on personal genomics as an area of the law?
I have a master’s in bioethics; I did that degree before I went to law school. So as I started thinking about the areas of law and policy that were most interesting to me, that was clearly one of them. And it seemed like there was a tremendous opportunity for a field that is developing and emerging and creating all sorts of new and exciting legal issues. And it’s something that I’ve always had an interest in the underlying science and technology, and I was fortunate enough in law school to start working with some real pioneers in the field, specifically George Church in the personal genome field. Everything sort of built from there. Now, it’s how I make my living, it’s my career. And I love it. It’s something new and fascinating every single day and I can’t get enough of it.
Gephardt visits Triangle on tour to spur medical innovation
Wednesday, June 30, 2010, 2:12 pmDick Gephardt is traveling across the country to reinvigorate medical innovation and on Wednesday the former Congressman, U.S. House majority leader and two-time Democratic presidential candidate visited North Carolina, a U.S. biotech hot spot.
He carried a to-do list with him that he plans to take to Congress and the Obama Administration.
Changing the way the Food and Drug Administration regulates the development of new medicines, making the research and development tax credit for companies permanent and establishing a federal office to spearhead public-private partnerships between universities, the National Institutes of Health and R&D companies were among the suggestions on the list.
“It needs to be the new space program in my view,” Gephardt told about 100 people at the packed Capital City Club in Raleigh. Read more…
Conference Sheds Light on Rare Disease with Links to Autism
Monday, June 21, 2010, 12:19 pmAny time you learn something new, your brain undergoes a sort of remodeling to store the fresh bits of information. This process takes advantage of what most brain scientists refer to as “neural plasticity,” the ability of our brains’ synapses – the connections from one neuron to another – to strengthen or weaken in order to house new memories.
For most of us, our neurons remain malleable throughout our lives, giving us the opportunity for lifelong learning (though it does get harder with age). But for those afflicted with the rare genetic disease Angelman syndrome, the synapses are almost completely incapable of being remodeled. By the time children with Angelman syndrome are toddlers, their synapses have largely lost their plasticity, hardening like concrete into rigid structures that can no longer easily relay new information.
The result is quite tragic – children whose bodies grow and age normally but whose brains are locked forever in the state of a two year old. But there is also reason to hope, as tremendous progress has been made in the understanding of Angelman syndrome, say many of the researchers, clinicians, and parents in attendance at a recent conference on the disorder. The 2010 Angelman Treatment and Research Institute Scientific Symposium, held at the Carolina Inn in Chapel Hill on June 15 and 16, showcased the current research on the genetic disease, with efforts tapping into the latest technological tools from mouse models, brain imaging, stem cells, proteomics and gene therapy.
“Over the span of the conferences I have attended, I really feel like I can see the gap getting smaller between the cellular molecular finding and its clinical applications,” said Heather Adams, a neuropsychologist from Massachusetts who specializes in kids with cognitive impairment. She also has a daughter with Angelman syndrome.
Angelman syndrome is a rare intellectual disorder that affects about one out of every 15,000 people. It is often placed on the autism spectrum because of the shared language difficulties and inappropriate social behavior. The language impairment in people with Angelman syndrome is much more severe than in those with autism – in fact, most of them never speak a single word. And whereas individuals with autism might shun social interaction, those with Angelman are quite social.
“One of the very endearing things about these individuals is they have a very happy demeanor,” said one of the conference’s organizers, Ben Philpot, an Associate Professor in Cell and Molecular Physiology at the University of North Carolina. “They are often said to have inappropriate laughter, but I think that they just find more things in life funny than we do.”
Their child-like view of the world – and the detrimental ramifications of a brain that is unable to change — all stem from a defect in a single gene called UBE3A. If the gene is mutated or deleted, the result is Angelman syndrome. But if it is duplicated, it may result in one of the more classic forms of autism. And altering its function can also lead to tumors of the cervix, though in the cancer field the gene goes by the name E6AP. So studying this one gene and its effects on the plasticity of our brains could have far-reaching implications.
“The work related to synaptic plasticity in genetic syndromes is forming thrilling insights as far as how we reason and learn things,” said conference attendee William Snider, director of the UNC Neuroscience Center.
At the two-day conference, scientists from across the country presented their latest findings on the role of this infamous gene in disease. One of the invited speakers, Harvard’s Michael Greenberg, explained the findings he had recently published in the journal Cell on targets of UBE3A. The molecule’s main job is to mark other proteins to be broken down or destroyed, so if UBE3A is absent then certain proteins accumulate to inappropriately high levels, causing subtle but lasting damage to our brain cells.
“If we know what the targets are we may be able to produce therapies that can break them down when UBE3A is no longer able to do its job,” said Philpot.
Philpot’s own work has indicated that pharmacotherapeutics or behavioral modifications may be able to restore the brain’s plasticity. He is currently using funding from the NC Translational and Clinical Sciences Institute (NC TraCS) to search for new molecules to treat Angelman syndrome, an area that is understandably of intense interest for many in the field.
“As a scientist I say the progress that has been made so far is remarkable, but as a parent, I say it is not fast enough,” said Alina Szmant, a marine biologist from Wilmington who has a 31-year-old daughter, Selena, with Angelman Syndrome.
Mark Nespeca, a clinician at Children’s Hospital in San Diego who also attended the conference, says that the pace of research depends a lot on your perspective. Because he does not conduct research himself, conferences like this one help him keep up with the many advances that have occurred since he was in medical school.
“With the advances in technology today, people are talking about sequencing your entire genome for just a thousand dollars,” said Nespeca. “There may come a day when kids will be coming to us at two months of age newly diagnosed, and we can say is there something we can do to make a difference so you can walk, can talk, not have seizures. But for a parent dealing with this illness day in and day out, it must be hard to wait and hope for that day to come.”
ScienceOnline2010 – interview with Tom Linden
Wednesday, May 12, 2010, 9:27 pmContinuing with the tradition from last two years, I will occasionally post interviews with some of the participants of the ScienceOnline2010 conference that was held in the Research Triangle Park, NC back in January. See all the interviews in this series here. You can check out previous years’ interviews as well: 2008 and 2009.
Today, I asked Tom Linden from the UNC School of Journalism and Mass Communication to answer a few questions:
RTP researchers help track diseases linked to climate change
Tuesday, April 27, 2010, 8:53 pmDuke University researchers suspect climate change is a reason why a deadly new version of a tropical fungus is spreading in the temperate climate of the Pacific Northwest.
In Africa, South America, Southeast Asia and Australia, crytococcus gattii infects eucalyptus trees and bothers people with compromised immune systems, such as HIV/AIDS patients and organ transplant recipients, who inhale its spores. But the strain that was first documented on Vancouver Island, Canada, a decade ago and has now spread to Seattle and Portland causes chest pain, fever, shortness of breath and weight loss in otherwise healthy people and has killed at least six of them.
In February 2007, the first North Carolina case, an otherwise healthy man, was treated at Duke University Medical Center, the Duke researchers reported in PLoS One. In a paper they published a week ago in PLoS Pathogen, the researchers wrote that the cryptococcus gattii strain in the Pacific Northwest was new, much more virulent and favored mammals.
Regenerative medicine: Taking lessons from salamanders
Wednesday, April 21, 2010, 9:30 pmDr. Anthony Atala likes to start his talks with a time-lapse video of a salamander regrowing an injured limb over two weeks. Then, the director of the Wake Forest Institute for Regenerative Medicine asks his listeners to imagine humans regenerating limbs, tissue or organs that have been damaged or are missing.
“Salamanders can regenerate. Why can’t we?,” Atala asked during a TEDMed talk last fall.
Actually, we can and we do, he responded Tuesday during a presentation at Research Triangle Park headquarters, where he had traveled from Winston-Salem to talk at the TARDC luncheon. “It’s real,” he said.
The human body replaces bones every 10 years, skin every two weeks and intestinal tissue every six days. Regenerative medicine taps into the body’s ability to regrow tissue, expands on it and speeds it up in the laboratory. Read more…
Duke: How germs influenced the Civil War
Wednesday, April 14, 2010, 11:01 pmNowhere are the medical advances of the past 150 years more obvious than during war. A U.S. soldier who is injured today on the battlefield in Iraq has about a 95 percent chance of survival. In World War II, the chance was 50 percent and during the Civil War it was 19 percent.
But the benefits of modern medicine go well beyond combat surgery.
Dr. Margaret Humphreys, a Duke University professor in the history of medicine and a fellow at the National Humanities Center in Research Triangle Park, issued a reminder Tuesday during a lecture at the N.C. Museum of History in Raleigh that germs bag a bigger punch than bullets.
“It wasn’t until World War I that more soldiers died from wounds than from disease,” Humphreys said during her lecture on the role malaria and yellow fever played during the Civil War. Read more…
Regenerative medicine: Making spare parts for the body
Wednesday, April 7, 2010, 10:54 pmEfforts to grow skin, organs and blood vessels have advanced so fast so far that researchers who gathered Tuesday at the regenerative medicine forum in Winston-Salem paused before offering suggestions what they might accomplish in the next two decades.
Fashioned after conferences that have sprung up in the past few years across the U.S. and in Europe, the three-day forum brought together researchers, investors and policymakers interested in regenerative medicine, tissue engineering and stem cells. It was the first such event organized by Wake Forest University’s Institute for Regenerative Medicine, which is headed by Dr. Anthony Atala, a urological surgeon who in 1999 was the first to implant a laboratory-grown organ into a patient.
The organ was a bladder. Now researchers are working on skin, blood vessels and entire livers. So, what’s next? How about a whole heart, or a kidney grown from a skin cell?
“I don’t think that’s science fiction,” said Dr. Robert Lanza, chief scientific officer of Advanced Cell Technology, a biotech company near Boston. Read more…








